GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bstricta_Bostr.21942s0012 Bostr.21942s0012	Scaffold21942	159244	160719	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bstricta_Bostr.21942s0012.1 Bostr.21942s0012.1 PAC:30659068	High	No	706		Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -19.830 AMFE: -0.571 GC content %: 34.703
Bstricta_Bostr.21942s0012.2 Bostr.21942s0012.2 PAC:30659069	High	No	717		Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -19.370 AMFE: -0.560 GC content %: 34.589

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).