GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bstricta_Bostr.25219s0389 Bostr.25219s0389	Scaffold25219	1771497	1772759	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bstricta_Bostr.25219s0389.1 Bostr.25219s0389.1 PAC:30671450	High	No	599		Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -23.840 AMFE: -0.562 GC content %: 42.404
Bstricta_Bostr.25219s0389.2 Bostr.25219s0389.2 PAC:30671451	High	No	536		Get ORF Coding potential... Type: noncoding Potential: -0.566 Folding energies... MFEI: -23.358 AMFE: -0.559 GC content %: 41.791

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).