GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bstricta_Bostr.26527s0022 Bostr.26527s0022	Scaffold26527	155826	157943	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bstricta_Bostr.26527s0022.1 Bostr.26527s0022.1 PAC:30654111	High	No	848		Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -22.476 AMFE: -0.569 GC content %: 39.505
Bstricta_Bostr.26527s0022.2 Bostr.26527s0022.2 PAC:30654112	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -22.670 AMFE: -0.571 GC content %: 39.690

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).