Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Bstricta_Bostr.3288s0191 Bostr.3288s0191 |
Scaffold3288 | 920698 | 922125 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Bstricta_Bostr.3288s0191.1 Bostr.3288s0191.1 PAC:30675560 |
Low | Yes | 783 | Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -21.814 AMFE: -0.560 GC content %: 38.953 | |
Bstricta_Bostr.3288s0191.2 Bostr.3288s0191.2 PAC:30675561 |
Low | Yes | 715 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -22.336 AMFE: -0.572 GC content %: 39.021 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bstricta_Bostr.3288s0191.1 | Rfam | 11.0 | mir-598 | 0.0019 |
Bstricta_Bostr.3288s0191.2 | Rfam | 11.0 | mir-598 | 0.0018 |
Bstricta_Bostr.3288s0191.1 | SwissProt | 2015-06-01 | O14218 | 1.0e-4 |
Bstricta_Bostr.3288s0191.2 | SwissProt | 2015-06-01 | O14218 | 1.0e-4 |