GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10002881m.g Ciclev10002881m.g	scaffold_5	34523832	34526367	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10002881m Ciclev10002881m PAC:20785755	High	No	897		Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -25.162 AMFE: -0.641 GC content %: 39.242
Cclementina_Ciclev10002891m Ciclev10002891m PAC:20785756	High	No	894		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -24.720 AMFE: -0.631 GC content %: 39.150

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).