GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10002882m.g Ciclev10002882m.g	scaffold_5	34791963	34793333	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10002880m Ciclev10002880m PAC:20787410	High	No	683		Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -27.994 AMFE: -0.598 GC content %: 46.852
Cclementina_Ciclev10002882m Ciclev10002882m PAC:20787411	High	No	894		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -28.837 AMFE: -0.651 GC content %: 44.295

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).