GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10003012m.g Ciclev10003012m.g	scaffold_5	42288917	42290276	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10003009m Ciclev10003009m PAC:20786554	High	No	764		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -23.168 AMFE: -0.606 GC content %: 38.220
Cclementina_Ciclev10003012m Ciclev10003012m PAC:20786555	High	No	672		Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -23.988 AMFE: -0.601 GC content %: 39.881

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).