GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10009993m.g Ciclev10009993m.g	scaffold_1	18540964	18543354	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10009993m Ciclev10009993m PAC:20793159	High	No	722		Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -25.956 AMFE: -0.597 GC content %: 43.490
Cclementina_Ciclev10009998m Ciclev10009998m PAC:20793160	High	No	719		Get ORF Coding potential... Type: noncoding Potential: -0.444 Folding energies... MFEI: -26.273 AMFE: -0.604 GC content %: 43.533
Cclementina_Ciclev10010019m Ciclev10010019m PAC:20793161	High	No	1404		Get ORF Coding potential... Type: noncoding Potential: -0.610 Folding energies... MFEI: -24.736 AMFE: -0.636 GC content %: 38.889
Cclementina_Ciclev10010022m Ciclev10010022m PAC:20793162	High	No	753		Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -26.056 AMFE: -0.602 GC content %: 43.293

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).