GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10010135m.g Ciclev10010135m.g	scaffold_1	753432	755538	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10010135m Ciclev10010135m PAC:20795727	High	No	404		Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -20.842 AMFE: -0.543 GC content %: 38.366
Cclementina_Ciclev10010137m Ciclev10010137m PAC:20795728	High	No	671		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -20.999 AMFE: -0.649 GC content %: 32.340

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).