GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10012627m.g Ciclev10012627m.g	scaffold_6	23109594	23113746	Phytozome	v1.0	Citrus_clementina	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10013141m Ciclev10013141m PAC:20798002	High	No	2231		Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -24.850 AMFE: -0.679 GC content %: 36.620
Cclementina_Ciclev10013143m Ciclev10013143m PAC:20798003	High	No	2729		Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -24.734 AMFE: -0.686 GC content %: 36.057

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).