GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10013128m.g Ciclev10013128m.g	scaffold_6	22758027	22760875	Phytozome	v1.0	Citrus_clementina	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10013133m Ciclev10013133m PAC:20796407	Low	No	743		Get ORF Coding potential... Type: coding Potential: 0.004 Folding energies... MFEI: -27.335 AMFE: -0.641 GC content %: 42.665
Cclementina_Ciclev10013134m Ciclev10013134m PAC:20796408	High	No	893		Get ORF Coding potential... Type: noncoding Potential: -0.048 Folding energies... MFEI: -27.167 AMFE: -0.647 GC content %: 41.993

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).