GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10018398m.g Ciclev10018398m.g	scaffold_2	6942326	6945068	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10018398m Ciclev10018398m PAC:20816720	High	No	1003		Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -24.905 AMFE: -0.672 GC content %: 37.089
Cclementina_Ciclev10018401m Ciclev10018401m PAC:20816722	High	No	795		Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -24.868 AMFE: -0.618 GC content %: 40.252
Cclementina_Ciclev10018403m Ciclev10018403m PAC:20816719	High	No	919		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -24.004 AMFE: -0.651 GC content %: 36.888
Cclementina_Ciclev10018415m Ciclev10018415m PAC:20816721	High	No	711		Get ORF Coding potential... Type: noncoding Potential: -0.693 Folding energies... MFEI: -24.177 AMFE: -0.599 GC content %: 40.366

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).