GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10023020m.g Ciclev10023020m.g	scaffold_3	50363248	50364138	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10023019m Ciclev10023019m PAC:20811415	High	No	507		Get ORF Coding potential... Type: noncoding Potential: -0.674 Folding energies... MFEI: -30.986 AMFE: -0.636 GC content %: 48.718
Cclementina_Ciclev10023020m Ciclev10023020m PAC:20811414	High	No	556		Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -30.108 AMFE: -0.639 GC content %: 47.122
Cclementina_Ciclev10023131m Ciclev10023131m PAC:20811416	High	No	663		Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -28.582 AMFE: -0.638 GC content %: 44.796

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).