GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10023139m.g Ciclev10023139m.g	scaffold_3	253879	254627	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10023139m Ciclev10023139m PAC:20805948	High	No	531		Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -25.386 AMFE: -0.599 GC content %: 42.373
Cclementina_Ciclev10023142m Ciclev10023142m PAC:20805949	High	No	528		Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -25.398 AMFE: -0.599 GC content %: 42.424
Cclementina_Ciclev10023152m Ciclev10023152m PAC:20805950	High	No	525		Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -25.448 AMFE: -0.599 GC content %: 42.476
Cclementina_Ciclev10023158m Ciclev10023158m PAC:20805951	High	No	522		Get ORF Coding potential... Type: noncoding Potential: -0.813 Folding energies... MFEI: -25.785 AMFE: -0.606 GC content %: 42.529

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).