GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10026845m.g Ciclev10026845m.g	scaffold_7	6798935	6802042	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10026843m Ciclev10026843m PAC:20801095	High	No	848		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -26.722 AMFE: -0.665 GC content %: 40.212
Cclementina_Ciclev10026845m Ciclev10026845m PAC:20801096	High	No	910		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -26.967 AMFE: -0.680 GC content %: 39.670

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).