GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10027369m.g Ciclev10027369m.g	scaffold_7	13436035	13436394	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10027369m Ciclev10027369m PAC:20802196	High	No	360		Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -23.556 AMFE: -0.527 GC content %: 44.722

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).