Gene
Cclementina Ciclev10029666m.g
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Cclementina_Ciclev10029666m.g Ciclev10029666m.g |
scaffold_8 | 2403492 | 2406922 | Phytozome | v1.0 | Citrus_clementina | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Cclementina_Ciclev10029662m Ciclev10029662m PAC:20814013 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -26.321 AMFE: -0.603 GC content %: 43.625 | |
| Cclementina_Ciclev10029665m Ciclev10029665m PAC:20814015 |
High | No | 1381 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -22.469 AMFE: -0.579 GC content %: 38.812 | |
| Cclementina_Ciclev10029666m Ciclev10029666m PAC:20814012 |
High | No | 1373 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -26.336 AMFE: -0.600 GC content %: 43.918 | |
| Cclementina_Ciclev10029667m Ciclev10029667m PAC:20814014 |
High | No | 1160 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -22.457 AMFE: -0.547 GC content %: 41.034 | |
| Cclementina_Ciclev10029677m Ciclev10029677m PAC:20814017 |
High | No | 1118 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -22.880 AMFE: -0.561 GC content %: 40.787 | |
| Cclementina_Ciclev10029680m Ciclev10029680m PAC:20814016 |
High | No | 1331 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -26.634 AMFE: -0.608 GC content %: 43.802 | |
| Cclementina_Ciclev10029693m Ciclev10029693m PAC:20814018 |
High | No | 1260 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -26.238 AMFE: -0.603 GC content %: 43.492 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
