Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cclementina_Ciclev10033115m.g Ciclev10033115m.g |
scaffold_4 | 23072592 | 23073840 | Phytozome | v1.0 | Citrus_clementina | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cclementina_Ciclev10033115m Ciclev10033115m PAC:20805080 |
Low | No | 1000 | Get ORF Coding potential... Type: noncoding Potential: -0.186 Folding energies... MFEI: -24.270 AMFE: -0.622 GC content %: 39.000 | |
Cclementina_Ciclev10033135m Ciclev10033135m PAC:20805081 |
Low | No | 982 | Get ORF Coding potential... Type: noncoding Potential: -0.325 Folding energies... MFEI: -24.084 AMFE: -0.621 GC content %: 38.798 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cclementina_Ciclev10033115m | SwissProt | 2015-06-01 | Q93X17 | 3.0e-10 |
Cclementina_Ciclev10033135m | SwissProt | 2015-06-01 | Q9LFR3 | 9.0e-10 |