GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10033249m.g Ciclev10033249m.g	scaffold_4	11594906	11596709	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10033249m Ciclev10033249m PAC:20804616	High	No	980		Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -23.204 AMFE: -0.602 GC content %: 38.571
Cclementina_Ciclev10033252m Ciclev10033252m PAC:20804617	High	No	962		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -22.672 AMFE: -0.589 GC content %: 38.462
Cclementina_Ciclev10033253m Ciclev10033253m PAC:20804615	High	No	947		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -22.703 AMFE: -0.591 GC content %: 38.437
Cclementina_Ciclev10033262m Ciclev10033262m PAC:20804618	High	No	951		Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -22.892 AMFE: -0.596 GC content %: 38.381

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).