GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10033280m.g Ciclev10033280m.g	scaffold_4	10482689	10483452	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10033280m Ciclev10033280m PAC:20803728	High	No	495		Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -22.061 AMFE: -0.610 GC content %: 36.162
Cclementina_Ciclev10033285m Ciclev10033285m PAC:20803729	High	No	469		Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -22.132 AMFE: -0.600 GC content %: 36.887

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).