GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cgrandiflora_Cagra.0043s0021 Cagra.0043s0021	Scaffold43	95384	95587	Phytozome	v1.1	Capsella_grandiflora	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cgrandiflora_Cagra.0043s0021.1 Cagra.0043s0021.1 PAC:28899253	High	No	204		Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -26.029 AMFE: -0.577 GC content %: 45.098

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).