GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cgrandiflora_Cagra.1033s0002 Cagra.1033s0002	Scaffold1033	4798	5410	Phytozome	v1.1	Capsella_grandiflora	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cgrandiflora_Cagra.1033s0002.1 Cagra.1033s0002.1 PAC:28899844	High	No	613		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -20.424 AMFE: -0.559 GC content %: 36.542

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).