GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cgrandiflora_Cagra.1080s0014 Cagra.1080s0014	Scaffold1080	65298	65654	Phytozome	v1.1	Capsella_grandiflora	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cgrandiflora_Cagra.1080s0014.1 Cagra.1080s0014.1 PAC:28912272	High	No	357		Get ORF Coding potential... Type: noncoding Potential: -0.362 Folding energies... MFEI: -9.636 AMFE: -0.199 GC content %: 48.459

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).