GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cgrandiflora_Cagra.29012s0001 Cagra.29012s0001	Scaffold29012	232	1199	Phytozome	v1.1	Capsella_grandiflora	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cgrandiflora_Cagra.29012s0001.1 Cagra.29012s0001.1 PAC:28913214	High	No	468		Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -19.402 AMFE: -0.626 GC content %: 30.983

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).