Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cpapaya_evm.TU.contig_31645 evm.TU.contig_31645 |
contig_31645 | 6599 | 6931 | Phytozome | ASGPBv0.4 | Carica_papaya | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cpapaya_evm.TU.contig_31645.1 evm.TU.contig_31645.1 PAC:16430011 |
Low | No | 222 | Get ORF Coding potential... Type: noncoding Potential: -0.679 Folding energies... MFEI: -21.892 AMFE: -0.458 GC content %: 47.748 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cpapaya_evm.TU.contig_31645.1 | SwissProt | 2015-06-01 | P82769 | 1.0e-4 |