GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cpapaya_evm.TU.contig_34472 evm.TU.contig_34472	contig_34472	2254	2530	Phytozome	ASGPBv0.4	Carica_papaya	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cpapaya_evm.TU.contig_34472.1 evm.TU.contig_34472.1 PAC:16430454	High	No	220		Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -5.227 AMFE: -0.115 GC content %: 45.455

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).