Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cpapaya_evm.TU.contig_35193 evm.TU.contig_35193 |
contig_35193 | 710 | 1829 | Phytozome | ASGPBv0.4 | Carica_papaya | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cpapaya_evm.TU.contig_35193.1 evm.TU.contig_35193.1 PAC:16430605 |
Low | No | 309 | Get ORF Coding potential... Type: noncoding Potential: -0.324 Folding energies... MFEI: -12.880 AMFE: -0.379 GC content %: 33.981 | |
Cpapaya_evm.TU.contig_35193.2 evm.TU.contig_35193.2 PAC:16430606 |
Low | No | 261 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -13.793 AMFE: -0.391 GC content %: 35.249 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cpapaya_evm.TU.contig_35193.1 | RepBase (RepeatMasker) | 2014-01-31 | Sat-1_CPa | |
Cpapaya_evm.TU.contig_35193.2 | RepBase (RepeatMasker) | 2014-01-31 | Sat-1_CPa |