GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cpapaya_evm.TU.contig_35221 evm.TU.contig_35221	contig_35221	1872	2171	Phytozome	ASGPBv0.4	Carica_papaya	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cpapaya_evm.TU.contig_35221.1 evm.TU.contig_35221.1 PAC:16430612	Low	Yes	300		Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -41.467 AMFE: -0.715 GC content %: 58.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).