Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cpapaya_evm.TU.supercontig_10.144 evm.TU.supercontig_10.144 |
supercontig_10 | 1989738 | 1992269 | Phytozome | ASGPBv0.4 | Carica_papaya | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cpapaya_evm.model.supercontig_10.144 evm.model.supercontig_10.144 PAC:16404498 |
Low | No | 348 | Get ORF Coding potential... Type: noncoding Potential: -0.377 Folding energies... MFEI: -26.494 AMFE: -0.632 GC content %: 41.954 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cpapaya_evm.model.supercontig_10.144 | SwissProt | 2015-06-01 | P24203 | 3.0e-9 |