Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cpapaya_evm.TU.supercontig_3.204 evm.TU.supercontig_3.204 |
supercontig_3 | 1520115 | 1521135 | Phytozome | ASGPBv0.4 | Carica_papaya | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cpapaya_evm.model.supercontig_3.204 evm.model.supercontig_3.204 PAC:16416485 |
Low | No | 321 | Get ORF Coding potential... Type: noncoding Potential: -0.562 Folding energies... MFEI: -27.975 AMFE: -0.665 GC content %: 42.056 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cpapaya_evm.model.supercontig_3.204 | RepBase (RepeatMasker) | 2014-01-31 | L1-1_CPa |