Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cpapaya_evm.TU.supercontig_55.177 evm.TU.supercontig_55.177 |
supercontig_55 | 1073081 | 1073425 | Phytozome | ASGPBv0.4 | Carica_papaya | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cpapaya_evm.model.supercontig_55.177 evm.model.supercontig_55.177 PAC:16422569 |
Low | No | 345 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -31.826 AMFE: -0.678 GC content %: 46.957 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cpapaya_evm.model.supercontig_55.177 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia24I |