GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Creinhardtii_Cre01.g007901 Cre01.g007901	chromosome_1	1522808	1533339	Phytozome	v5.5	Chlamydomonas_reinhardtii	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Creinhardtii_Cre01.g007901.t2.1 Cre01.g007901.t2.1 PAC:30789350	Low	Yes	395		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -43.114 AMFE: -0.701 GC content %: 61.519

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).