GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Creinhardtii_Cre13.g568467 Cre13.g568467	chromosome_13	1015656	1017657	Phytozome	v5.5	Chlamydomonas_reinhardtii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Creinhardtii_Cre13.g568467.t1.1 Cre13.g568467.t1.1 PAC:30784153	Low	Yes	1444		Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -43.657 AMFE: -0.711 GC content %: 61.427
Creinhardtii_Cre13.g568467.t2.1 Cre13.g568467.t2.1 PAC:30784154	Low	Yes	1162		Get ORF Coding potential... Type: noncoding Potential: -1.448 Folding energies... MFEI: -42.461 AMFE: -0.709 GC content %: 59.897

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).