GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Creinhardtii_Cre15.g641282 Cre15.g641282	chromosome_15	1205407	1206689	Phytozome	v5.5	Chlamydomonas_reinhardtii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Creinhardtii_Cre15.g641282.t1.1 Cre15.g641282.t1.1 PAC:30783761	Low	Yes	1283		Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -62.829 AMFE: -1.098 GC content %: 57.210
Creinhardtii_Cre15.g641282.t2.1 Cre15.g641282.t2.1 PAC:30783762	Low	Yes	1031		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -49.321 AMFE: -0.868 GC content %: 56.838

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).