GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10002237m.g Carubv10002237m.g	scaffold_6	811507	812944	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10002237m Carubv10002237m PAC:20908822	High	No	597		Get ORF Coding potential... Type: noncoding Potential: -0.319 Folding energies... MFEI: -23.199 AMFE: -0.587 GC content %: 39.531
Crubella_Carubv10002332m Carubv10002332m PAC:20908823	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -23.997 AMFE: -0.607 GC content %: 39.528

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).