GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10002288m.g Carubv10002288m.g	scaffold_6	3052696	3054280	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10002288m Carubv10002288m PAC:20907994	High	No	724		Get ORF Coding potential... Type: noncoding Potential: -0.458 Folding energies... MFEI: -22.790 AMFE: -0.567 GC content %: 40.193
Crubella_Carubv10002361m Carubv10002361m PAC:20907995	High	No	602		Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -23.173 AMFE: -0.554 GC content %: 41.860

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).