Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Crubella_Carubv10002346m.g Carubv10002346m.g |
scaffold_6 | 13055908 | 13056381 | Phytozome | v1.0 | Capsella_rubella | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Crubella_Carubv10002346m Carubv10002346m PAC:20909895 |
Low | No | 474 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -18.987 AMFE: -0.495 GC content %: 38.397 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Crubella_Carubv10002346m | RepBase (RepeatMasker) | 2014-01-31 | RTip1_LTR |