GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10002401m.g Carubv10002401m.g	scaffold_6	8660150	8660721	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10002401m Carubv10002401m PAC:20908192	High	No	337		Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -22.018 AMFE: -0.538 GC content %: 40.950
Crubella_Carubv10002404m Carubv10002404m PAC:20908191	High	No	400		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -21.575 AMFE: -0.553 GC content %: 39.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).