GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10006159m.g Carubv10006159m.g	scaffold_7	7055188	7056382	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10006159m Carubv10006159m PAC:20894062	High	No	717		Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -24.909 AMFE: -0.629 GC content %: 39.609
Crubella_Carubv10006161m Carubv10006161m PAC:20894063	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -24.709 AMFE: -0.640 GC content %: 38.582

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).