GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10015021m.g Carubv10015021m.g	scaffold_3	7190272	7191184	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10015019m Carubv10015019m PAC:20899717	High	No	443		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -20.587 AMFE: -0.543 GC content %: 37.923
Crubella_Carubv10015021m Carubv10015021m PAC:20899718	High	No	560		Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -22.000 AMFE: -0.601 GC content %: 36.607

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).