GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10015043m.g Carubv10015043m.g	scaffold_3	14768513	14770276	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10015043m Carubv10015043m PAC:20900308	High	No	911		Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -19.330 AMFE: -0.497 GC content %: 38.858
Crubella_Carubv10015046m Carubv10015046m PAC:20900309	High	No	1016		Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -19.774 AMFE: -0.519 GC content %: 38.091

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).