GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10021189m.g Carubv10021189m.g	scaffold_2	12242604	12244469	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10021188m Carubv10021188m PAC:20904450	High	No	987		Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -24.853 AMFE: -0.627 GC content %: 39.615
Crubella_Carubv10021189m Carubv10021189m PAC:20904451	High	No	898		Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -25.290 AMFE: -0.626 GC content %: 40.423

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).