GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10027388m.g Carubv10027388m.g	scaffold_8	12297169	12299321	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10027388m Carubv10027388m PAC:20913733	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -21.549 AMFE: -0.576 GC content %: 37.426
Crubella_Carubv10027403m Carubv10027403m PAC:20913734	High	No	573		Get ORF Coding potential... Type: noncoding Potential: -0.391 Folding energies... MFEI: -21.414 AMFE: -0.524 GC content %: 40.838

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).