GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.011950 Cucsa.011950	scaffold00154	1339561	1340381	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.011950.1 Cucsa.011950.1 PAC:16951481	High	No	821		Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -20.646 AMFE: -0.501 GC content %: 41.169

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).