Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csativus_Cucsa.046430 Cucsa.046430 |
scaffold00542 | 1910735 | 1913522 | Phytozome | v1.0 | Cucumis_sativus | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csativus_Cucsa.046430.1 Cucsa.046430.1 PAC:16953522 |
Low | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -0.073 Folding energies... MFEI: -23.569 AMFE: -0.577 GC content %: 40.838 | |
Csativus_Cucsa.046430.2 Cucsa.046430.2 PAC:16953523 |
Low | No | 821 | Get ORF Coding potential... Type: noncoding Potential: -0.068 Folding energies... MFEI: -23.812 AMFE: -0.580 GC content %: 41.048 | |
Csativus_Cucsa.046430.3 Cucsa.046430.3 PAC:16953524 |
Low | No | 928 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -21.509 AMFE: -0.559 GC content %: 38.470 | |
Csativus_Cucsa.046430.5 Cucsa.046430.5 PAC:16953526 |
Low | No | 737 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -24.125 AMFE: -0.587 GC content %: 41.113 | |
Csativus_Cucsa.046430.6 Cucsa.046430.6 PAC:16953527 |
Low | No | 782 | Get ORF Coding potential... Type: noncoding Potential: -0.087 Folding energies... MFEI: -23.964 AMFE: -0.586 GC content %: 40.921 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csativus_Cucsa.046430.3 | SwissProt | 2015-06-01 | Q93ZJ3 | 2.0e-15 |
Csativus_Cucsa.046430.5 | SwissProt | 2015-06-01 | Q93ZJ3 | 2.0e-14 |
Csativus_Cucsa.046430.6 | SwissProt | 2015-06-01 | Q93ZJ3 | 2.0e-14 |
Csativus_Cucsa.046430.1 | SwissProt | 2015-06-01 | Q93ZJ3 | 1.0e-15 |
Csativus_Cucsa.046430.2 | SwissProt | 2015-06-01 | Q93ZJ3 | 1.0e-15 |