Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csativus_Cucsa.079850 Cucsa.079850 |
scaffold00793 | 2715902 | 2720459 | Phytozome | v1.0 | Cucumis_sativus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csativus_Cucsa.079850.1 Cucsa.079850.1 PAC:16956272 |
High | No | 1021 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -26.954 AMFE: -0.666 GC content %: 40.451 | |
Csativus_Cucsa.079850.2 Cucsa.079850.2 PAC:16956273 |
High | No | 1091 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.682 AMFE: -0.662 GC content %: 40.330 | |
Csativus_Cucsa.079850.3 Cucsa.079850.3 PAC:16956274 |
High | No | 1017 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -26.775 AMFE: -0.663 GC content %: 40.413 |