Gene

Csativus Cucsa.087590

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Csativus_Cucsa.087590
Cucsa.087590
scaffold00888 165272 165773 Phytozome v1.0 Cucumis_sativus
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Csativus_Cucsa.087590.1
Cucsa.087590.1
PAC:16956877
High No 502
Coding potential...
Type: noncoding Potential: -0.820
Folding energies...
MFEI: -17.311 AMFE: -0.460
GC content
%: 37.649


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Cucsa.087590.png