GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.108440 Cucsa.108440	scaffold00931	591452	594923	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.108440.1 Cucsa.108440.1 PAC:16959734	High	No	1285		Get ORF Coding potential... Type: noncoding Potential: -0.334 Folding energies... MFEI: -26.288 AMFE: -0.707 GC content %: 37.198
Csativus_Cucsa.108440.2 Cucsa.108440.2 PAC:16959735	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -25.244 AMFE: -0.656 GC content %: 38.498
Csativus_Cucsa.108440.3 Cucsa.108440.3 PAC:16959736	High	No	945		Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -25.048 AMFE: -0.647 GC content %: 38.730
Csativus_Cucsa.108440.4 Cucsa.108440.4 PAC:16959737	High	No	850		Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -24.965 AMFE: -0.645 GC content %: 38.706

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).