GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.109380 Cucsa.109380	scaffold00934	294470	298554	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.109380.1 Cucsa.109380.1 PAC:16959841	High	No	696		Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -26.092 AMFE: -0.668 GC content %: 39.080
Csativus_Cucsa.109380.2 Cucsa.109380.2 PAC:16959842	High	No	648		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -26.775 AMFE: -0.714 GC content %: 37.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).