Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csativus_Cucsa.109400 Cucsa.109400 |
scaffold00934 | 312360 | 314245 | Phytozome | v1.0 | Cucumis_sativus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csativus_Cucsa.109400.1 Cucsa.109400.1 PAC:16959846 |
Low | No | 775 | Get ORF Coding potential... Type: noncoding Potential: -0.342 Folding energies... MFEI: -21.406 AMFE: -0.653 GC content %: 32.774 | |
Csativus_Cucsa.109400.2 Cucsa.109400.2 PAC:16959847 |
Low | No | 606 | Get ORF Coding potential... Type: noncoding Potential: -0.479 Folding energies... MFEI: -18.650 AMFE: -0.611 GC content %: 30.528 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csativus_Cucsa.109400.1 | RepBase (RepeatMasker) | 2014-01-31 | hAT-5_SBi | |
Csativus_Cucsa.109400.2 | RepBase (RepeatMasker) | 2014-01-31 | hAT-5_SBi |